Jatropha Genome Database

JcCB0068571.10 (JcS_100055.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0068571
Scaffold:
JcS_100055 JcCA0206251(+) =JcCA0312961(-) =JcCB0176661(+) =JcCB0068571(+) =JcCB0368851(+) =JcCB0480731(+) =JcCB0459841(+) =JcCB0152261(+) =JcCB0590911(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9GNF4_POPTR 1184 68.9 83.6 (tr|B9GNF4) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_756196 PE=4 SV=1
Arabidopsis_pep AT3G02010.1 1008 59.5 77.7 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:337965-340442 FORWARD
soybean_pep Glyma19g27520.1 1110 67.8 83.6  
Medicago_pep IMGA|Medtr7g096950.1 1161 66.8 83.7 Pentatricopeptide repeat chr07_pseudomolecule_IMGAG_V3 21831382-21828916 E EGN_Mt090430 20090702
grape_pep GSVIVT01032994001 1142 66.0 81.7  
castor_bean_cds 30131.m006988 771 81.3 81.3 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30131.m006988 864 75.6 86.5 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0068571.10 length: 815 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0013 52-69
76-103
105-134
176-203
206-236
279-303
307-332
380-402
408-438
481-508
509-538
544-570
582-605
HMMTigr TIGR00756 PPR: 0.00043 74-104
105-139
175-205
206-240
276-311
377-411
412-442
478-508
509-543
544-579
580-611
ProfileScan PS51375 PPR 5.481 103-137
72-102
41-71
204-238
173-203
138-172
305-339
274-304
406-440
375-405
507-541
476-506
441-475
542-572
578-608
645-679
610-644
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 4.3e-297 91-815
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 4.3e-297 91-815
superfamily SSF48452 TPR-like 6.7e-21 305-663
40-344