Jatropha Genome Database

JcCB0065721.30 (JcS_100140.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0065721
Scaffold:
JcS_100140 JcCB0181351(+) =JcCB0065721(+) =JcCB0122031(-) =JcCA0075601(-) =JcCB0703531(+) =JcPR04HQKDW(+) =JcCB0060791(+) =JcCB0336651(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S796_RICCO 129 66.3 76.8 (tr|B9S796) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0774710 PE=4 SV=1
Arabidopsis_pep AT5G13770.1 98.2 61.8 79.4 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:4445461-4447290 FORWARD
soybean_pep Glyma20g01350.1 112 53.7 75.8  
Medicago_pep IMGA|Medtr5g008360.1 52.8 28.2 62.0 Pentatricopeptide repeat chr05_pseudomolecule_IMGAG_V3 1556137-1561842 E EGN_Mt090430 20090702
grape_pep GSVIVT01010259001 117 56.8 75.8  
castor_bean_cds 29780.m001348 129 85.6 85.6 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29780.m001348 129 66.3 76.8 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c08202 297 92.3 92.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0065721.30 length: 109 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.01 5-25
31-60
HMMTigr TIGR00756 PPR: 0.00028 1-29
30-64
ProfileScan PS51375 PPR 9.668 1-27
28-62
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 6e-14 1-74
HMMPanther PTHR10483:SF3 SNF1-LIKE 6e-14 1-74