Jatropha Genome Database

JcCB0065721.20 (JcS_100140.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0065721
Scaffold:
JcS_100140 JcCB0181351(+) =JcCB0065721(+) =JcCB0122031(-) =JcCA0075601(-) =JcCB0703531(+) =JcPR04HQKDW(+) =JcCB0060791(+) =JcCB0336651(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S769_RICCO 995 77.4 88.4 (tr|B9S769) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0774040 PE=4 SV=1
Arabidopsis_pep AT2G15820.1 765 58.9 77.4 | Symbols: OTP51 | OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51); RNA splicing factor, transesterification mechanism | chr2:6888734-6891360 REVERSE
soybean_pep Glyma07g29520.1 746 62.1 76.9  
Medicago_pep IMGA|Medtr1g032010.1 756 59.0 75.8 LAGLIDADG DNA endonuclease chr01_pseudomolecule_IMGAG_V3 7877710-7880621 E EGN_Mt090430 20090702
grape_pep GSVIVT01031785001 918 73.7 84.6  
castor_bean_cds 29780.m001321 1356 85.0 85.0 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29780.m001321 995 77.4 88.4 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09963 1409 99.7 99.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0065721.20 length: 625 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0073 168-190
206-227
304-325
340-367
HMMTigr TIGR00756 PPR: 0.001 12-46
47-85
199-233
234-268
303-338
339-373
ProfileScan PS51375 PPR 7.596 10-44
45-82
162-197
232-266
301-336
337-371
IPR004860 LAGLIDADG DNA endonuclease
Molecular Function GO:0004519 endonuclease activity    
HMMPfam PF03161 LAGLIDADG_2 1.3e-30 402-566
no_ID  
Gene3D G3DSA:3.10.28.10 no description 4.6e-15 398-491
491-585
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.2e-44 2-369
Seg seg seg NA 406-414
533-543
604-623
superfamily SSF48452 TPR-like 1.8e-17 16-370