Jatropha Genome Database

JcCB0064981.30 (JcS_200908.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0064981
Scaffold:
JcS_200908 JcCB0738501(-) =JcCD0062953(+) =JcCB0064981(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SN00_RICCO 387 75.4 78.4 (tr|B9SN00) GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0482890 PE=4 SV=1
Arabidopsis_pep AT3G21175.1 215 62.2 72.4 | Symbols: ZML1, TIFY2B | ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding | chr3:7422832-7424598 FORWARD
soybean_pep Glyma06g10290.1 325 82.3 88.5  
Medicago_pep IMGA|Medtr3g149720.1 282 72.4 80.7 Zinc finger, GATA-type; ZIM; CCT chr03_pseudomolecule_IMGAG_V3 39259323-39268418 E EGN_Mt090430 20090702
grape_pep GSVIVT01009198001 349 89.1 91.7  
castor_bean_cds 29596.m000719 494 90.2 90.2 GATA transcription factor, putative
castor_bean_pep 29596.m000719 387 75.4 78.4 GATA transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06383 60.0 85.1 85.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0064981.30 length: 291 aa.
IPR000679 Zinc finger, GATA-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00320 GATA 9.1e-14 200-236
HMMSmart SM00401 no description 1e-08 194-249
PatternScan PS00344 GATA_ZN_FINGER_1 NA 200-227
ProfileScan PS50114 GATA_ZN_FINGER_2 8.524 194-242
IPR010399 Tify
HMMPfam PF06200 tify 1.4e-11 70-102
ProfileScan PS51320 TIFY 12.942 68-103
IPR010402 CCT domain
HMMPfam PF06203 CCT 3.5e-16 128-170
ProfileScan PS51017 CCT 12.650 128-170
no_ID  
Seg seg seg NA 25-43
48-69
superfamily SSF57716 Glucocorticoid 1.8e-13 194-242