Jatropha Genome Database

JcCB0062371.10 (JcS_200771.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0062371
Scaffold:
JcS_200771 JcCB0041831(-) =JcCB0062371(+) =JcCA0132271(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RK32_RICCO 371 74.1 75.3 (tr|B9RK32) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1046170 PE=4 SV=1
Arabidopsis_pep AT5G20510.1 321 60.0 70.0 | Symbols: AL5 | AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding | chr5:6939991-6942846 REVERSE
soybean_pep Glyma13g16740.1 355 70.5 73.3  
Medicago_pep IMGA|Medtr2g120670.1 292 60.0 66.9 Zinc finger, FYVE/PHD-type chr02_pseudomolecule_IMGAG_V3 28441848-28445607 E EGN_Mt090430 20090702
grape_pep GSVIVT01015122001 361 71.8 73.0  
castor_bean_cds 29912.m005290 948 90.9 90.9 DNA binding protein, putative
castor_bean_pep 29912.m005290 371 74.1 75.3 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02316 379 87.9 87.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0062371.10 length: 250 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 no description 2.1e-09 196-244
IPR011011 Zinc finger, FYVE/PHD-type
Molecular Function GO:0008270 zinc ion binding    
superfamily SSF57903 FYVE/PHD 1.5e-11 189-250
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 197-243
IPR019787 Zinc finger, PHD-finger
HMMPfam PF00628 PHD 3.3e-10 197-246
ProfileScan PS50016 ZF_PHD_2 9.535 194-246
IPR021998 Protein of unknown function DUF3594
HMMPfam PF12165 DUF3594 5.3e-84 10-146
no_ID  
Gene3D G3DSA:3.30.40.10 no description 6.6e-16 189-246
HMMPanther PTHR23123 PHD/F-BOX 1.7e-10 200-244
Seg seg seg NA 59-76
148-171
179-194