Jatropha Genome Database

JcCB0060791.10 (JcS_100140.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0060791
Scaffold:
JcS_100140 JcCB0181351(+) =JcCB0065721(+) =JcCB0122031(-) =JcCA0075601(-) =JcCB0703531(+) =JcPR04HQKDW(+) =JcCB0060791(+) =JcCB0336651(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S767_RICCO 315 76.0 81.7 (tr|B9S767) RNA-binding protein Nova-1, putative OS=Ricinus communis GN=RCOM_0774000 PE=4 SV=1
Arabidopsis_pep AT2G25970.1 182 48.1 63.9 | Symbols: | KH domain-containing protein | chr2:11071844-11075604 REVERSE
soybean_pep Glyma06g05400.1 194 51.6 65.7  
Medicago_pep IMGA|Medtr1g020830.1 180 49.0 65.3 KH, type 1 chr01_pseudomolecule_IMGAG_V3 4692352-4699157 E EGN_Mt090430 20090702
grape_pep GSVIVT01035354001 206 53.6 67.9  
castor_bean_cds 29780.m001319 480 89.3 89.3 RNA-binding protein Nova-1, putative
castor_bean_pep 29780.m001319 315 76.0 81.7 RNA-binding protein Nova-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c10922 428 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0060791.10 length: 222 aa.
IPR004087 K Homology
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 no description 11 85-158
179-222
IPR004088 K Homology, type 1
Molecular Function GO:0003723 RNA binding    
ProfileScan PS50084 KH_TYPE_1 11.804 86-153
180-222
IPR009019 K Homology, prokaryotic type
Molecular Function GO:0003723 RNA binding    
superfamily SSF54814 Prokaryotic 2.2e-08 155-220
IPR018111 K Homology, type 1, subgroup
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 1.1e-09 89-153
185-216
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 1.5e-06 87-157
179-218
HMMPanther PTHR10288 RNA-BINDING 1.2e-48 1-221
HMMPanther PTHR10288:SF53 UNCHARACTERIZED 1.2e-48 1-221
Seg seg seg NA 3-10
51-79
superfamily SSF54791 Eukaryotic 9.4e-16 74-165