Jatropha Genome Database

JcCB0059641.10 (JcS_102325.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0059641
Scaffold:
JcS_102325 JcCB0427111(+) =JcCB0059641(-) =JcCA0308491(+) =JcCB0380351(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RB48_RICCO 620 77.3 86.5 (tr|B9RB48) Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_1511320 PE=4 SV=1
Arabidopsis_pep AT1G10560.1 291 41.4 60.7 | Symbols: PUB18, ATPUB18 | PUB18 (PLANT U-BOX 18); ubiquitin-protein ligase | chr1:3484613-3486706 FORWARD
soybean_pep Glyma17g09850.1 473 59.0 75.1  
Medicago_pep IMGA|Medtr8g125550.1 470 59.1 75.8 U box chr08_pseudomolecule_IMGAG_V3 29300486-29303958 E EGN_Mt090430 20090702
grape_pep GSVIVT01020229001 445 54.5 75.2  
castor_bean_cds 30147.m013973 440 81.6 81.6 Spotted leaf protein, putative
castor_bean_pep 30147.m013973 620 77.3 86.5 Spotted leaf protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0059641.10 length: 560 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
HMMPfam PF00514 Arm 0.00012 396-429
HMMSmart SM00185 no description 0.55 388-430
431-472
515-556
ProfileScan PS50176 ARM_REPEAT 8.522 400-443
526-560
IPR003613 U box domain
Cellular Component GO:0000151 ubiquitin ligase complex    
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Biological Process GO:0016567 protein ubiquitination    
HMMPfam PF04564 U-box 6.2e-20 258-328
HMMSmart SM00504 no description 2.4e-30 260-323
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 2.7e-23 374-555
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 3.3e-39 297-557
no_ID  
Gene3D G3DSA:3.30.40.10 no description 2.1e-25 253-330
HMMPanther PTHR22904 TPR 7.3e-12 263-329
HMMPanther PTHR22904:SF27 CARBOXY 7.3e-12 263-329
Seg seg seg NA 110-127
193-205
superfamily SSF57850 RING/U-box 4e-14 240-324