Jatropha Genome Database

JcCB0057861.10 (JcS_102464.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0057861
Scaffold:
JcS_102464 JcCB0057861(-) =JcCA0006661(+) =JcCB0254351(+) =JcCB0582451(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q94LA8_ARATH 578 52.8 70.6 (tr|Q94LA8) Polyprotein, putative OS=Arabidopsis thaliana GN=T18F15.5 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 409 39.1 57.6 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma10g01130.1 510 48.7 64.2  
Medicago_pep IMGA|Medtr4g080020.1 419 45.2 60.9 Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H EGN_Mt090430 20090702
grape_pep GSVIVT01012382001 187 48.4 66.5  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0057861.10 length: 1074 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 1.8e-98 602-845
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 4.5e-249 11-1069
Seg seg seg NA 68-78
152-174
319-335
410-419
488-511
superfamily SSF56672 DNA/RNA 1.2e-44 601-1036