Jatropha Genome Database

JcCB0057251.10 (JcS_100179.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0057251
Scaffold:
JcS_100179 JcCB0060211(+) =JcCB0171551(+) =JcCD0159961(+) =JcCA0298381(+) =JcPR02JKLVA(-) =JcCB0273241(+) =JcPR04GRZMU(+) =JcCB0057251(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RS49_RICCO 451 62.8 73.9 (tr|B9RS49) Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_0802990 PE=4 SV=1
Arabidopsis_pep AT4G32720.1 286 45.5 60.3 | Symbols: AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding | chr4:15787313-15789683 FORWARD
soybean_pep Glyma06g08650.2 308 48.8 63.6  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01035666001 306 60.7 74.0  
castor_bean_cds 29794.m003448 337 80.7 80.7 lupus la ribonucleoprotein, putative
castor_bean_pep 29794.m003448 451 62.8 73.9 lupus la ribonucleoprotein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c07808 1390 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0057251.10 length: 390 aa.
IPR000504 RNA recognition motif, RNP-1
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.7e-07 135-188
HMMSmart SM00360 no description 4.9e-06 129-201
ProfileScan PS50102 RRM 11.042 128-213
IPR006630 RNA-binding protein Lupus La
HMMPfam PF05383 La 6.3e-06 14-97
HMMSmart SM00715 no description 4.8e-13 8-112
ProfileScan PS50961 HTH_LA 12.477 4-121
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
Gene3D G3DSA:1.10.10.10 no description 5.4e-06 1-116
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2.2e-10 117-220
no_ID  
Coil coil coiled-coil NA 278-299
HMMPanther PTHR22792 LUPUS 8.9e-89 1-369
HMMPanther PTHR22792:SF4 RNA-BINDING 8.9e-89 1-369
Seg seg seg NA 225-232
374-384
superfamily SSF46785 "Winged 2e-08 1-116
superfamily SSF54928 RNA-binding 4.5e-12 117-237