Jatropha Genome Database

JcCB0052881.10 (JcS_105038.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0052881
Scaffold:
JcS_105038 JcCB0528831(-) =JcCB0110731(+) =JcCB0052881(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SL09_RICCO 411 76.7 87.2 (tr|B9SL09) Breast cancer type 2 susceptibility protein brca2, putative OS=Ricinus communis GN=RCOM_0847980 PE=4 SV=1
Arabidopsis_pep AT5G01630.1 317 57.6 75.0 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B (BRCA2-LIKE B); protein binding / single-stranded DNA binding | chr5:235117-240911 REVERSE
soybean_pep Glyma13g11750.1 317 60.2 77.0  
Medicago_pep IMGA|Medtr3g105990.1 313 57.8 77.3 Breast cancer type 2 susceptibility protein chr03_pseudomolecule_IMGAG_V3 26625163-26623202 H EGN_Mt090430 20090702
grape_pep GSVIVT01030280001 379 73.2 82.9  
castor_bean_cds 29820.m001006 513 83.7 83.7 breast cancer type 2 susceptibility protein brca2, putative
castor_bean_pep 29820.m001006 411 76.7 87.2 breast cancer type 2 susceptibility protein brca2, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0052881.10 length: 280 aa.
IPR015525 Breast cancer type 2 susceptibility protein
method AccNumber shortName E-value location
HMMPanther PTHR11289 BREAST 1.6e-45 12-265
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 2.2e-13 28-122