Jatropha Genome Database

JcCB0044821.10 (JcS_110218.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0044821
Scaffold:
JcS_110218 JcCB0044821(-) =JcCB0461271(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9R9H0_RICCO 206 56.1 61.8 (tr|B9R9H0) Dehydration-responsive element-binding protein 1B, putative OS=Ricinus communis GN=RCOM_1497440 PE=4 SV=1
Arabidopsis_pep AT5G52020.1 138 45.0 56.7 | Symbols: | AP2 domain-containing protein | chr5:21124192-21124890 REVERSE
soybean_pep Glyma20g29440.1 139 50.9 58.2  
Medicago_pep IMGA|Medtr1g129460.1 134 48.0 55.4 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28924038-28925362 F EGN_Mt090430 20090702
grape_pep GSVIVT01033793001 129 44.2 54.7  
castor_bean_cds 30147.m014311 143 85.2 85.2 Dehydration-responsive element-binding protein 1B, putative
castor_bean_pep 30147.m014311 206 56.1 61.8 Dehydration-responsive element-binding protein 1B, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0044821.10 length: 221 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 5.8e-07 57-68
94-114
Gene3D G3DSA:3.30.730.10 no description 3.3e-19 55-115
HMMPfam PF00847 AP2 1.1e-13 56-104
HMMSmart SM00380 no description 6.1e-28 56-118
ProfileScan PS51032 AP2_ERF 20.192 56-112
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 8.5e-20 55-115
no_ID  
Seg seg seg NA 29-50
91-99
122-140