Jatropha Genome Database

JcCB0039021.10 (JcS_104911.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0039021
Scaffold:
JcS_104911 JcCB0466381(+) =JcCB0196521(-) =JcCB0039021(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9R865_RICCO 947 89.5 92.2 (tr|B9R865) Auxin response factor, putative OS=Ricinus communis GN=RCOM_1597120 PE=4 SV=1
Arabidopsis_pep AT1G19850.1 763 73.0 81.0 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor | chr1:6887353-6891182 FORWARD
soybean_pep Glyma14g40540.1 787 79.1 87.0  
Medicago_pep IMGA|Medtr8g132840.1 531 68.2 78.8 Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation chr08_pseudomolecule_IMGAG_V3 31477595-31471354 E EGN_Mt090430 20090702
grape_pep GSVIVT01009865001 835 78.1 86.1  
castor_bean_cds 30170.m014161 1433 87.9 87.9 Auxin response factor, putative
castor_bean_pep 30170.m014161 947 89.5 92.2 Auxin response factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06508 1540 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0039021.10 length: 512 aa.
IPR003340 Transcriptional factor B3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1.3e-22 149-250
ProfileScan PS50863 B3 12.943 149-251
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0009725 response to hormone stimulus    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF06507 Auxin_resp 4.5e-38 275-358
no_ID  
Gene3D G3DSA:2.40.330.10 no description 4.8e-43 136-265
Seg seg seg NA 273-280