Jatropha Genome Database

JcCB0036391.20  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0036391
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5BF87_VITVI 764 49.2 62.1 (tr|A5BF87) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042091 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 357 39.4 57.8 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma16g09250.1 588 42.9 58.7  
Medicago_pep IMGA|Medtr4g079130.1 485 37.6 52.9 Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H EGN_Mt090430 20090702
grape_pep GSVIVT01013655001 176 57.9 76.4  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02042 52.0 96.7 96.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0036391.20 length: 761 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 1.2e-05 2-39
ProfileScan PS50994 INTEGRASE 12.051 1-88
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 5.3e-15 5-88
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
HMMPfam PF07727 RVT_2 5.5e-87 284-527
no_ID  
Gene3D G3DSA:3.30.420.10 no description 2.6e-07 5-93
HMMPanther PTHR11439 GAG-POL-RELATED 0 9-758
Seg seg seg NA 251-260
superfamily SSF56672 DNA/RNA 1.3e-38 283-717