Jatropha Genome Database

JcCB0034131.10 (JcS_102398.30)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0034131
Scaffold:
JcS_102398 JcCB0050881(-) =JcCB0034131(+) =JcCA0000872(-) =JcCA0003591(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BKR0_VITVI 1125 47.5 64.4 (tr|A5BKR0) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031073 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 305 36.8 56.5 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma11g04990.1 637 65.3 79.6  
Medicago_pep IMGA|Medtr4g080020.1 281 37.4 58.9 Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H EGN_Mt090430 20090702
grape_pep GSVIVT01014104001 796 55.5 73.1  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0034131.10 length: 1323 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 3.4e-26 475-599
ProfileScan PS50994 INTEGRASE 21.390 465-645
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 0.00011 235-251
HMMSmart SM00343 no description 0.0051 235-251
ProfileScan PS50158 ZF_CCHC 9.949 235-251
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 5.9e-37 468-645
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
HMMPfam PF07727 RVT_2 4.2e-93 844-1087
no_ID  
Coil coil coiled-coil NA 174-195
Gene3D G3DSA:3.30.420.10 no description 1.5e-18 495-650
HMMPanther PTHR11439 GAG-POL-RELATED 5.5e-293 3-1211
Seg seg seg NA 202-217
730-741
1213-1226
superfamily SSF56672 DNA/RNA 1.3e-18 843-1264