Jatropha Genome Database

JcCB0031431.30 (JcS_106340.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0031431
Scaffold:
JcS_106340 JcCA0139031(-) =JcCB0031431(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S9Y4_RICCO 761 79.4 87.3 (tr|B9S9Y4) DNA binding protein, putative OS=Ricinus communis GN=RCOM_0523380 PE=3 SV=1
Arabidopsis_pep AT4G13980.1 488 53.7 69.9 | Symbols: AT-HSFA5, HSFA5 | AT-HSFA5; DNA binding / transcription factor | chr4:8077519-8079247 REVERSE
soybean_pep Glyma05g28460.1 588 61.9 75.2  
Medicago_pep IMGA|Medtr4g132650.1 530 59.0 71.3 Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding chr04_pseudomolecule_IMGAG_V3 31586660-31583275 F EGN_Mt090430 20090702
grape_pep GSVIVT01021040001 268 73.6 85.4  
castor_bean_cds 29629.m001435 1164 85.4 85.4 DNA binding protein, putative
castor_bean_pep 29629.m001435 761 79.4 87.3 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09198 52.0 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0031431.30 length: 495 aa.
IPR000232 Heat shock factor (HSF)-type, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00056 HSFDOMAIN 5.5e-19 26-49
64-76
77-89
HMMPfam PF00447 HSF_DNA-bind 3.8e-33 26-116
HMMSmart SM00415 no description 1.4e-60 22-115
PatternScan PS00434 HSF_DOMAIN NA 65-89
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
Gene3D G3DSA:1.10.10.10 no description 4.7e-37 20-115
no_ID  
Coil coil coiled-coil NA 133-154
161-196
HMMPanther PTHR10015 HEAT 1.1e-82 31-209
HMMPanther PTHR10015:SF7 HEAT 1.1e-82 31-209
Seg seg seg NA 15-22
427-439
superfamily SSF46785 "Winged 3e-39 20-115