Jatropha Genome Database

JcCB0028391.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0028391
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RRP8_RICCO 315 67.2 72.7 (tr|B9RRP8) R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1426110 PE=4 SV=1
Arabidopsis_pep AT3G12720.1 263 88.7 95.5 | Symbols: ATY53, ATMYB67 | ATMYB67 (MYB DOMAIN PROTEIN 67); DNA binding / transcription factor | chr3:4043407-4044522 REVERSE
soybean_pep Glyma08g17370.1 255 73.3 84.2  
Medicago_pep IMGA|Medtr2g085800.1 255 88.5 94.6 Homeodomain-related; chr02_pseudomolecule_IMGAG_V3 19499269-19501235 H EGN_Mt090430 20090702
grape_pep GSVIVT01036712001 309 61.9 67.9  
castor_bean_cds 30125.m001257 402 87.8 87.8 r2r3-myb transcription factor, putative
castor_bean_pep 30125.m001257 315 67.2 72.7 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0028391.10 length: 272 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 1.8e-14 12-62
65-113
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.2e-12 13-82
85-145
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 6.4e-17 11-63
67-115
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.1e-13 13-60
66-109
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 1.5e-93 5-169
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 18.591 61-115
8-60
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 1.5e-93 5-169
Seg seg seg NA 200-215
243-259