Jatropha Genome Database

JcCB0028271.20 (JcS_100720.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0028271
Scaffold:
JcS_100720 JcCB0902031(-) =JcCA0268211(-) =JcCA0152031(-) =JcCB0028271(-) =JcCA0311281(-) =JcCB0466631(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9H5D8_POPTR 784 71.5 81.9 (tr|B9H5D8) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_860804 PE=4 SV=1
Arabidopsis_pep AT5G43820.1 659 59.8 78.9 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15010.1); Has 14980 Blast hits to 5082 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 156; Fungi - 253; Plants - 14070; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink). | chr5:17618948-17620588 FORWARD
soybean_pep Glyma15g12020.1 533 52.2 68.6  
Medicago_pep IMGA|Medtr2g121400.1 638 59.0 78.3 Pentatricopeptide repeat chr02_pseudomolecule_IMGAG_V3 28804987-28802028 H EGN_Mt090430 20090702
grape_pep GSVIVT01013390001 746 66.9 83.3  
castor_bean_cds 30170.m013708 648 88.9 88.9 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30170.m013708 380 89.7 97.4 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0028271.20 length: 586 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.46 193-222
297-326
332-359
367-396
402-431
508-536
HMMTigr TIGR00756 PPR: 0.0019 192-226
227-261
262-295
296-330
331-365
366-400
401-435
436-470
471-505
506-540
ProfileScan PS51375 PPR 5.492 190-224
225-259
294-328
260-290
329-363
364-398
399-433
434-468
469-503
504-538
539-569
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 8.4e-90 178-569
superfamily SSF48452 TPR-like 0.0005 178-427
449-565