Jatropha Genome Database

JcCB0028271.10 (JcS_100720.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0028271
Scaffold:
JcS_100720 JcCB0902031(-) =JcCA0268211(-) =JcCA0152031(-) =JcCB0028271(-) =JcCA0311281(-) =JcCB0466631(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R8Q0_RICCO 224 81.5 86.9 (tr|B9R8Q0) Brca1 interacting protein helicase 1 brip1, putative OS=Ricinus communis GN=RCOM_1601590 PE=4 SV=1
Arabidopsis_pep AT1G20720.1 194 78.3 83.5 | Symbols: | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding | chr1:7185658-7192794 REVERSE
soybean_pep Glyma14g39780.1 151 64.8 75.8  
Medicago_pep IMGA|AC234703_2.1 73.9 51.6 73.4 Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 20090702
grape_pep GSVIVT01013389001 186 79.6 93.2  
castor_bean_cds 30170.m014390 226 83.1 83.1 brca1 interacting protein helicase 1 brip1, putative
castor_bean_pep 30170.m014390 224 81.5 86.9 brca1 interacting protein helicase 1 brip1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0028271.10 length: 174 aa.
IPR014013 Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type
method AccNumber shortName E-value location
ProfileScan PS51193 HELICASE_ATP_BIND_2 11.696 23-174
no_ID  
HMMPanther PTHR11472 DNA 9.7e-42 23-123
HMMPanther PTHR11472:SF6 BRCA1 9.7e-42 23-123
Seg seg seg NA 6-18
superfamily SSF52540 P-loop 3.6e-06 22-97