Jatropha Genome Database

JcCB0025551.10 (JcS_104115.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0025551
Scaffold:
JcS_104115 JcCB0177351(+) =JcCB0025551(+) =JcCB0065751(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D1FMZ3_9ROSA 335 80.4 88.5 (tr|D1FMZ3) Putative auxin-binding protein 2 OS=Prunus salicina GN=ABP2 PE=2 SV=1
Arabidopsis_pep AT5G20630.1 302 70.8 83.3 | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | GER3 (GERMIN 3); oxalate oxidase | chr5:6975315-6975950 REVERSE
soybean_pep Glyma15g19510.1 303 74.6 85.2  
Medicago_pep IMGA|Medtr8g024770.1 258 63.3 74.4 Germin chr08_pseudomolecule_IMGAG_V3 4749409-4750440 E EGN_Mt090430 20090702
grape_pep GSVIVT01028594001 249 56.8 77.7  
castor_bean_cds 29739.m003771 133 80.2 80.2 Auxin-binding protein ABP19a precursor, putative
castor_bean_pep 29739.m003771 308 74.8 83.3 Auxin-binding protein ABP19a precursor, putative
JAT_13201ests gi|218687569|gb|GH296162.1|GH296162 1219 99.5 99.5 JCL611 Jatropha curcas total leaf library Jatropha curcas cDNA, mRNA sequence
KJC_r1 KJC_c07269 957 99.0 99.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0025551.10 length: 208 aa.
IPR001929 Germin
method AccNumber shortName E-value location
Molecular Function GO:0030145 manganese ion binding    
Cellular Component GO:0048046 apoplast    
FPrintScan PR00325 GERMIN 4.3e-25 100-120
130-150
163-178
IPR006045 Cupin 1
Molecular Function GO:0045735 nutrient reservoir activity    
HMMPfam PF00190 Cupin_1 3.7e-24 66-196
HMMSmart SM00835 no description 2.2e-41 52-198
IPR011051 Cupin, RmlC-type
superfamily SSF51182 RmlC-like 2.6e-41 14-202
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 2.2e-68 14-208
IPR019780 Germin, manganese binding site
Molecular Function GO:0030145 manganese ion binding    
Cellular Component GO:0048046 apoplast    
PatternScan PS00725 GERMIN NA 95-108