Jatropha Genome Database

JcCB0025091.20 (JcS_102242.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0025091
Scaffold:
JcS_102242 JcCB0358041(+) =JcCB0224701(-) =JcCB0025091(-) =JcCA0115811(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9GKD0_POPTR 179 89.4 95.7 (tr|B9GKD0) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_709269 PE=4 SV=1
Arabidopsis_pep AT5G41560.1 139 68.4 82.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 59 Blast hits to 59 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16621427-16622619 REVERSE
soybean_pep Glyma03g29080.2 147 70.2 89.4  
Medicago_pep IMGA|Medtr7g108480.1 144 69.9 87.1 hypothetical protein chr07_pseudomolecule_IMGAG_V3 25553092-25556253 E EGN_Mt090430 20090702
grape_pep GSVIVT01019416001 173 86.2 91.5  
castor_bean_cds 30190.m011275 295 93.5 93.5 conserved hypothetical protein
castor_bean_pep 30190.m011275 131 93.9 98.5 conserved hypothetical protein
JAT_13201ests gi|268519117|gb|FM887584.1|FM887584 163 100.0 100.0 FM887584 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000818, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0025091.20 length: 95 aa.
IPR018276 Ubiquitin ligase, Det1/DDB1-complexing
method AccNumber shortName E-value location
HMMPfam PF10172 DDA1 9.4e-25 3-68