Jatropha Genome Database

JcCB0024801.10 (JcS_103308.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0024801
Scaffold:
JcS_103308 JcCA0261941(-) =JcCB0756571(-) =JcCB0024801(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SMK7_RICCO 977 91.2 94.0 (tr|B9SMK7) Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_0230740 PE=3 SV=1
Arabidopsis_pep AT4G37930.1 933 87.2 92.6 | Symbols: SHM1, STM, SHMT1 | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | chr4:17831891-17834742 REVERSE
soybean_pep Glyma08g37270.1 954 89.1 93.0  
Medicago_pep IMGA|Medtr5g032440.1 938 86.8 92.8 Glycine hydroxymethyltransferase; chr05_pseudomolecule_IMGAG_V3 13143361-13138285 E EGN_Mt090430 20090702
grape_pep GSVIVT01003859001 966 89.3 93.6  
castor_bean_cds 28333.m000569 1937 90.8 90.8 serine hydroxymethyltransferase, putative
castor_bean_pep 28333.m000569 977 91.2 94.0 serine hydroxymethyltransferase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03518 2456 99.4 99.4  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0024801.10 length: 513 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HMMPIR PIRSF000412 Serine/glycine 1e-217 28-508
HMMPanther PTHR11680 SERINE 0 56-512
HMMPfam PF00464 SHMT 2.8e-211 54-451
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 1.8e-102 83-356
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
superfamily SSF53383 PLP-dependent 3.7e-178 35-507
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 277-293
no_ID  
Seg seg seg NA 454-467