Jatropha Genome Database

JcCB0023791.10 (JcS_109072.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0023791
Scaffold:
JcS_109072 JcCB0023791(+) =JcCB0766101(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9P638_POPTR 108 62.3 77.9 (tr|B9P638) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_829146 PE=4 SV=1
Arabidopsis_pep AT5G38895.1 101 56.0 72.0 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:15572084-15573315 FORWARD
soybean_pep Glyma08g27730.2 103 60.0 76.0  
Medicago_pep IMGA|Medtr7g015020.1 103 60.0 76.0 Zinc finger, RING-type chr07_pseudomolecule_IMGAG_V3 3683692-3688795 E EGN_Mt090430 20090702
grape_pep GSVIVT01012252001 101 61.2 80.6  
castor_bean_cds 30174.m009078 89.7 83.2 83.2 protein binding protein, putative
castor_bean_pep 30174.m009078 108 61.4 79.5 protein binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0023791.10 length: 112 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 no description 4.5e-06 46-86
ProfileScan PS50089 ZF_RING_2 11.530 46-86
IPR018957 Zinc finger, C3HC4 RING-type
HMMPfam PF00097 zf-C3HC4 2.8e-07 46-86
no_ID  
Gene3D G3DSA:3.30.40.10 no description 8.6e-11 39-108
HMMPanther PTHR22764 RING 1.4e-09 39-98
Seg seg seg NA 99-112
superfamily SSF57850 RING/U-box 7.2e-16 39-108