Jatropha Genome Database

JcCB0022161.10 (JcS_100333.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0022161
Scaffold:
JcS_100333 JcCB0600521(-) =JcCA0299871(-) =JcCB0022161(-) =JcCB0207251(+) =JcCA0147341(-) =JcCB0238831(+) =JcCB0293281(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R9T8_RICCO 1300 85.5 89.9 (tr|B9R9T8) Structural maintenance of chromosome, putative OS=Ricinus communis GN=RCOM_1500520 PE=4 SV=1
Arabidopsis_pep AT5G62410.1 1118 74.3 84.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter | chr5:25056308-25062436 FORWARD
soybean_pep Glyma13g27210.1 1188 78.0 86.5  
Medicago_pep IMGA|Medtr8g087350.1 91.3 26.4 44.6 Prefoldin; SMCs flexible hinge chr08_pseudomolecule_IMGAG_V3 18141018-18153271 E EGN_Mt090430 20090702
grape_pep GSVIVT01018715001 1052 68.0 76.4  
castor_bean_cds 30147.m014233 1201 87.4 87.4 Structural maintenance of chromosome, putative
castor_bean_pep 30147.m014233 1300 85.5 89.9 Structural maintenance of chromosome, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0022161.10 length: 759 aa.
IPR003395 RecF/RecN/SMC protein, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005694 chromosome    
HMMPfam PF02463 SMC_N 3.1e-32 2-435
IPR010935 SMCs flexible hinge
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0051276 chromosome organization    
HMMPfam PF06470 SMC_hinge 6.3e-26 518-638
superfamily SSF75553 Smc 7.2e-45 476-686
no_ID  
Coil coil coiled-coil NA 178-199
267-288
328-349
352-380
393-449
487-508
679-700
Gene3D G3DSA:3.40.50.300 no description 2.7e-50 1-219
HMMPanther PTHR18937 STRUCTURAL 0 23-751
HMMPanther PTHR18937:SF9 STRUCTURAL 0 23-751
Seg seg seg NA 425-438
440-451
659-673
superfamily SSF52540 P-loop 1.9e-27 1-667