Jatropha Genome Database

JcCB0019791.10 (JcS_103955.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0019791
Scaffold:
JcS_103955 JcCB0121431(+) =JcCB0019791(-) =JcCA0253521(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9PFF0_POPTR 594 72.4 77.9 (tr|A9PFF0) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Arabidopsis_pep AT2G01940.1 447 57.1 65.1 | Symbols: SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding | chr2:432652-434917 FORWARD
soybean_pep Glyma08g09760.1 494 61.5 69.7  
Medicago_pep IMGA|Medtr8g018830.1 242 65.8 82.6 Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V3 3503403-3500493 E EGN_Mt090430 20090702
grape_pep GSVIVT01011587001 530 66.4 73.5  
castor_bean_cds 29780.m001390 533 86.2 86.2 nucleic acid binding protein, putative
castor_bean_pep 29780.m001390 562 69.0 73.5 nucleic acid binding protein, putative
JAT_13201ests gi|268518912|gb|FM887379.1|FM887379 367 99.5 99.5 FM887379 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000567, mRNA sequence
KJC_r1 KJC_c04805 1742 99.9 99.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0019791.10 length: 431 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 65-85
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.970 63-85
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 60 63-85
104-134
140-167
no_ID  
Coil coil coiled-coil NA 323-384
HMMPanther PTHR11389 ZINC 4.5e-09 60-400
Seg seg seg NA 5-20
202-216
241-253
254-265
401-411
superfamily SSF57667 C2H2 0.0003 62-87
122-162