| JcS_108823 | JcCB0019451(-) =JcPR01D87QC(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | A2Q2C7_MEDTR | 1064 | 51.0 | 68.4 | (tr|A2Q2C7) RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1 |
| Arabidopsis_pep | ATMG00860.1 | 132 | 53.3 | 70.0 | | Symbols: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD |
| soybean_pep | Glyma06g41410.1 | 978 | 49.9 | 66.0 | |
| Medicago_pep | IMGA|Medtr4g041210.1 | 896 | 47.6 | 63.2 | RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01018780001 | 231 | 32.2 | 49.9 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | --No_Hits-- |
| JcCB0019451.20 | length: 1100 aa. | |||
| IPR000477 | RNA-directed DNA polymerase (reverse transcriptase) | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003723 | RNA binding | ||
| Molecular Function | GO:0003964 | RNA-directed DNA polymerase activity | ||
| Biological Process | GO:0006278 | RNA-dependent DNA replication | ||
| HMMPfam | PF00078 | RVT_1 | 1.4e-23 | 194-354 |
| ProfileScan | PS50878 | RT_POL | 17.711 | 175-354 |
| IPR001584 | Integrase, catalytic core | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 6.3e-14 | 701-813 |
| ProfileScan | PS50994 | INTEGRASE | 18.293 | 694-858 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 2.9e-38 | 695-858 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.420.10 | no description | 2e-16 | 699-863 |
| Gene3D | G3DSA:3.30.70.270 | no description | 1.8e-22 | 188-354 |
| HMMPanther | PTHR10178 | GAG/POL/ENV | 0 | 100-980 |
| HMMPanther | PTHR10178:SF14 | RETROVIRUS | 0 | 100-980 |
| Seg | seg | seg | NA | 182-190 317-328 |
| superfamily | SSF56672 | DNA/RNA | 3e-145 | 137-554 |