Jatropha Genome Database

JcCB0017171.10 (JcS_102281.50)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0017171
Scaffold:
JcS_102281 JcCB0384311(+) =JcCB0211161(-) =JcCB0017171(-) =JcCA0079341(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9N668_POPTR 169 77.3 80.0 (tr|B9N668) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_583120 PE=4 SV=1
Arabidopsis_pep AT2G24590.1 156 71.2 73.9 | Symbols: | splicing factor, putative | chr2:10449837-10450860 FORWARD
soybean_pep Glyma14g17930.1 165 80.0 83.8  
Medicago_pep IMGA|Medtr1g010600.1 159 72.3 77.7 RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type chr01_pseudomolecule_IMGAG_V3 1809693-1805680 E EGN_Mt090430 20090702
grape_pep GSVIVT01033172001 164 78.5 80.4  
castor_bean_cds 29848.m004475 470 90.2 90.2 arginine/serine-rich splicing factor, putative
castor_bean_pep 28610.m000073 153 68.8 77.1 arginine/serine-rich splicing factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c01352 771 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0017171.10 length: 205 aa.
IPR000504 RNA recognition motif, RNP-1
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.7e-16 4-61
HMMSmart SM00360 no description 2.6e-18 3-69
ProfileScan PS50102 RRM 16.620 2-73
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 1.1e-07 91-106
HMMSmart SM00343 no description 7.9e-05 91-107
ProfileScan PS50158 ZF_CCHC 10.971 91-106
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.3e-16 3-86
no_ID  
HMMPanther PTHR10548 ARGININE/SERINE-RICH 3.6e-32 1-130
Seg seg seg NA 73-87
106-131
superfamily SSF54928 RNA-binding 6e-16 3-89