Jatropha Genome Database

JcCB0016411.10 (JcS_100204.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0016411
Scaffold:
JcS_100204 JcCA0117501(-) =JcCB0016411(-) =JHS12F24f(+) =JcCA0043471(+) =JcCB0321931(-) =JcCA0133521(+) =JcCB0838301(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TKK5_VITVI 535 91.5 95.7 (tr|D7TKK5) Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021666001 PE=4 SV=1
Arabidopsis_pep AT1G30580.1 511 84.1 92.0 | Symbols: | GTP binding | chr1:10831953-10835454 REVERSE
soybean_pep Glyma15g13830.1 529 90.4 94.7  
Medicago_pep IMGA|Medtr2g129790.1 506 84.8 92.9 TGS; GTP1/OBG chr02_pseudomolecule_IMGAG_V3 31477168-31486032 E EGN_Mt090430 20090702
grape_pep GSVIVT01021666001 535 91.5 95.7  
castor_bean_cds 30075.m001173 975 89.9 89.9 GTP-dependent nucleic acid-binding protein engD, putative
castor_bean_pep 30075.m001173 533 87.9 95.2 GTP-dependent nucleic acid-binding protein engD, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03265 1600 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0016411.10 length: 315 aa.
IPR002917 GTP-binding protein, HSR1-related
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF01926 MMR_HSR1 4e-08 42-111
IPR004396 Conserved hypothetical protein CHP00092
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00092 TIGR00092: 1.9e-88 1-315
IPR006073 GTP1/OBG
Molecular Function GO:0005525 GTP binding    
FPrintScan PR00326 GTP1OBG 1.4e-10 45-60
62-80
IPR012675 Beta-grasp fold, ferredoxin-type
Gene3D G3DSA:3.10.20.30 no description 4e-20 257-315
IPR012676 TGS-like
superfamily SSF81271 TGS-like 3.4e-22 257-315
IPR013029 Protein of unknown function DUF933
HMMPfam PF06071 YchF-GTPase_C 5.5e-24 257-315
no_ID  
Coil coil coiled-coil NA 112-133
Gene3D G3DSA:3.40.50.300 no description 1.9e-50 34-256
HMMPanther PTHR23305 GTP-BINDING 1.5e-165 28-315
HMMPanther PTHR23305:SF3 GTP-BINDING 1.5e-165 28-315
superfamily SSF52540 P-loop 7.4e-40 26-256