Jatropha Genome Database

JcCB0014741.20 (JcS_108572.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0014741
Scaffold:
JcS_108572 JcCB0014741(-) =JcSR201621f(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BF87_VITVI 570 40.9 57.8 (tr|A5BF87) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042091 PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma16g09250.1 343 30.3 44.0  
Medicago_pep IMGA|Medtr2g104160.1 222 33.3 50.6 Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H EGN_Mt090430 20090702
grape_pep GSVIVT01017026001 285 37.1 54.3  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0014741.20 length: 1079 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 3.1e-26 506-620
ProfileScan PS50994 INTEGRASE 23.589 505-669
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 9.7e-36 501-668
no_ID  
Gene3D G3DSA:3.30.420.10 no description 9.2e-21 531-674
HMMPanther PTHR11439 GAG-POL-RELATED 6.1e-136 40-1079
Seg seg seg NA 161-178
223-234
624-635
737-757
824-838