Jatropha Genome Database

JcCB0011311.10 (JcS_100291.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0011311
Scaffold:
JcS_100291 JcCB0308331(+) =JcCA0310551(+) =JcCB0111501(+) =JcCB0379211(-) =JcCD0126540(+) =JcCB0011311(+) =JcCB0234411(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RBE3_RICCO 853 90.1 94.3 (tr|B9RBE3) Coatomer gamma subunit, putative OS=Ricinus communis GN=RCOM_1674930 PE=4 SV=1
Arabidopsis_pep AT4G34450.1 744 78.6 87.4 | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD
soybean_pep Glyma12g04820.1 815 85.5 91.9  
Medicago_pep IMGA|Medtr3g159510.1 806 84.4 91.4 Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; chr03_pseudomolecule_IMGAG_V3 41757228-41747971 E EGN_Mt090430 20090702
grape_pep GSVIVT01031955001 825 87.4 93.4  
castor_bean_cds 30190.m010889 1526 88.6 88.6 coatomer gamma subunit, putative
castor_bean_pep 30190.m010889 853 90.1 94.3 coatomer gamma subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00851 2759 99.7 99.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0011311.10 length: 473 aa.
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF01602 Adaptin_N 7.3e-22 6-126
IPR009028 Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
superfamily SSF55711 Subdomain 3.4e-36 358-470
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 5.8e-23 4-155
IPR013040 Coatomer, gamma subunit, appendage, Ig-like subdomain
Molecular Function GO:0005198 structural molecule activity    
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030126 COPI vesicle coat    
Gene3D G3DSA:2.60.40.1480 no description 3.3e-50 200-354
IPR013041 Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
superfamily SSF49348 Clathrin 2.7e-59 196-357
IPR014863 Coatomer, gamma subunit , appendage
Molecular Function GO:0005198 structural molecule activity    
Molecular Function GO:0005515 protein binding    
Cellular Component GO:0005798 Golgi-associated vesicle    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
HMMPfam PF08752 Gamma-COP 2.5e-93 206-470
IPR015873 Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
Gene3D G3DSA:3.30.310.30 no description 3.4e-34 355-471
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 6.2e-21 3-135
no_ID  
HMMPanther PTHR10261 COATOMER 8.2e-194 6-470
Seg seg seg NA 8-19
278-289