Jatropha Genome Database

JcCB0011201.20  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0011201
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A9PL99_POPTR 178 77.8 84.6 (tr|A9PL99) AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=RAP2L9 PE=4 SV=1
Arabidopsis_pep AT1G71520.1 137 67.6 79.4 | Symbols: | AP2 domain-containing transcription factor, putative | chr1:26938612-26939043 FORWARD
soybean_pep Glyma11g01700.1 119 67.0 79.0  
Medicago_pep IMGA|Medtr5g008830.1 133 64.6 79.2 Pathogenesis-related transcriptional factor and ERF chr05_pseudomolecule_IMGAG_V3 1752061-1752601 E EGN_Mt090430 20090702
grape_pep GSVIVT01035502001 97.1 54.9 69.5  
castor_bean_cds 29938.m000611 81.8 88.3 88.3 Transcriptional factor TINY, putative
castor_bean_pep 29938.m000611 167 63.8 71.0 Transcriptional factor TINY, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0011201.20 length: 173 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 7e-08 15-26
37-53
Gene3D G3DSA:3.30.730.10 no description 6.4e-18 13-76
HMMPfam PF00847 AP2 1.2e-14 14-64
HMMSmart SM00380 no description 1.1e-26 14-79
ProfileScan PS51032 AP2_ERF 22.036 14-73
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 4.6e-19 13-76
no_ID  
Seg seg seg NA 111-126
139-163