Jatropha Genome Database

JcCB0009521.20 (JcS_100436.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0009521
Scaffold:
JcS_100436 JcCA0283211(-) =JcCB0151131(-) =JcCA0205491(-) =JcCB0423721(-) =JcCB0533111(-) =JcCB0009521(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9II58_POPTR 707 66.6 77.3 (tr|B9II58) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_907486 PE=4 SV=1
Arabidopsis_pep AT5G52630.1 570 58.9 75.6 | Symbols: MEF1 | MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) | chr5:21350375-21352141 FORWARD
soybean_pep Glyma19g32350.1 568 58.9 72.2  
Medicago_pep IMGA|Medtr7g110740.1 613 60.5 74.3 Pentatricopeptide repeat chr07_pseudomolecule_IMGAG_V3 25845845-25844055 H EGN_Mt090430 20090702
grape_pep GSVIVT01017989001 344 41.3 55.4  
castor_bean_cds 27810.m000635 716 84.8 84.8 DNA-damage-inducible protein f, putative
castor_bean_pep 27810.m000635 560 73.1 82.0 DNA-damage-inducible protein f, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0009521.20 length: 630 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.023 131-158
206-230
231-255
304-325
333-361
367-397
404-427
HMMTigr TIGR00756 PPR: 0.024 130-164
231-265
332-366
367-401
402-433
ProfileScan PS51375 PPR 6.643 128-162
198-232
163-197
330-364
299-329
264-298
365-399
400-434
466-500
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 5e-184 74-523
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 5e-184 74-523
Seg seg seg NA 69-80
298-311
476-490
573-582
superfamily SSF48452 TPR-like 3e-26 127-495