Jatropha Genome Database

JcCB0008031.30  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0008031
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SHK3_RICCO 540 85.3 88.8 (tr|B9SHK3) Syntaxin, putative OS=Ricinus communis GN=RCOM_1122500 PE=3 SV=1
Arabidopsis_pep AT1G08560.1 434 69.1 82.8 | Symbols: SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor | chr1:2709778-2710710 REVERSE
soybean_pep Glyma16g26710.1 452 77.4 87.2  
Medicago_pep IMGA|Medtr5g012160.1 435 71.1 80.1 Syntaxin/epimorphin family chr05_pseudomolecule_IMGAG_V3 3423699-3422140 F EGN_Mt090430 20090702
grape_pep GSVIVT01035559001 329 73.5 80.0  
castor_bean_cds 29950.m001178 674 84.1 84.1 syntaxin, arabidopsis thaliana, putative
castor_bean_pep 29950.m001178 540 85.3 88.8 syntaxin, arabidopsis thaliana, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05502 50.1 91.9 91.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0008031.30 length: 313 aa.
IPR000727 Target SNARE coiled-coil domain
method AccNumber shortName E-value location
HMMPfam PF05739 SNARE 5.9e-22 220-282
HMMSmart SM00397 no description 1.5e-19 210-277
ProfileScan PS50192 T_SNARE 18.379 215-277
IPR006011 Syntaxin, N-terminal
Cellular Component GO:0016020 membrane    
HMMPfam PF00804 Syntaxin 4.1e-09 47-150
HMMSmart SM00503 no description 4.5e-37 39-165
IPR006012 Syntaxin/epimorphin, conserved site
Molecular Function GO:0005484 SNAP receptor activity    
Biological Process GO:0006886 intracellular protein transport    
Cellular Component GO:0016020 membrane    
PatternScan PS00914 SYNTAXIN NA 221-261
IPR010989 t-SNARE
Molecular Function GO:0005515 protein binding    
Cellular Component GO:0016020 membrane    
Biological Process GO:0016192 vesicle-mediated transport    
superfamily SSF47661 t-snare 4.6e-43 41-270
no_ID  
Gene3D G3DSA:1.20.1050.30 no description 2e-45 41-249
HMMPanther PTHR19957 SYNTAXIN 1.2e-91 30-245
HMMPanther PTHR19957:SF26 SYNTAXIN, 1.2e-91 30-245
Seg seg seg NA 288-306