Jatropha Genome Database

JcCB0005461.20 (JcS_101369.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0005461
Scaffold:
JcS_101369 JcCB0756221(-) =JcCB0059061(-) =JcCB0453321(+) =JcCB0450851(-) =JcCB0005461(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SQS2_RICCO 263 75.0 86.9 (tr|B9SQS2) Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1217180 PE=4 SV=1
Arabidopsis_pep AT4G13440.1 129 42.7 62.0 | Symbols: | calcium-binding EF hand family protein | chr4:7810215-7810679 FORWARD
soybean_pep --No_Hits--        
Medicago_pep --No_Hits--        
grape_pep GSVIVT01027929001 141 45.6 63.8  
castor_bean_cds 30008.m000794 151 79.4 79.4 calcium ion binding protein, putative
castor_bean_pep 30008.m000794 263 75.0 86.9 calcium ion binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0005461.20 length: 170 aa.
IPR002048 Calcium-binding EF-hand
method AccNumber shortName E-value location
Molecular Function GO:0005509 calcium ion binding    
HMMSmart SM00054 no description 9.4 22-50
57-85
IPR011992 EF-hand-like domain
Molecular Function GO:0005509 calcium ion binding    
Gene3D G3DSA:1.10.238.10 no description 5.1e-08 16-82
IPR018247 EF-Hand 1, calcium-binding site
PatternScan PS00018 EF_HAND_1 NA 31-43
66-78
IPR018248 EF-Hand, Calmodulin
HMMPfam PF00036 efhand 3.5e-08 23-49
IPR018249 EF-HAND 2
ProfileScan PS50222 EF_HAND_2 10.385 18-53
60-88
no_ID  
HMMPanther PTHR10891 CALMODULIN 1.2e-08 16-97
superfamily SSF47473 EF-hand 5.3e-14 11-82