Jatropha Genome Database

JcCB0005461.10 (JcS_101369.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0005461
Scaffold:
JcS_101369 JcCB0756221(-) =JcCB0059061(-) =JcCB0453321(+) =JcCB0450851(-) =JcCB0005461(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SQS1_RICCO 708 72.4 78.4 (tr|B9SQS1) ATP binding protein, putative OS=Ricinus communis GN=RCOM_1217070 PE=4 SV=1
Arabidopsis_pep AT3G24320.1 623 63.2 74.4 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease | chr3:8823229-8829571 REVERSE
soybean_pep Glyma10g26450.1 429 65.7 73.8  
Medicago_pep IMGA|Medtr1g065690.1 548 52.7 61.1 Excinuclease ABC, C subunit, N-terminal; MutS 1 protein chr01_pseudomolecule_IMGAG_V3 13157439-13142729 E EGN_Mt090430 20090702
grape_pep GSVIVT01027931001 659 67.9 75.7  
castor_bean_cds 30008.m000793 1086 89.9 89.9 ATP binding protein, putative
castor_bean_pep 30008.m000793 708 72.4 78.4 ATP binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c08648 252 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0005461.10 length: 492 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPanther PTHR11361 DNA 3.1e-146 161-400
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF01624 MutS_I 3.6e-12 148-243
IPR016151 DNA mismatch repair protein MutS, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
Gene3D G3DSA:3.40.1170.10 no description 1.6e-14 131-244
superfamily SSF55271 DNA 1.7e-22 128-246
no_ID  
HMMPanther PTHR11361:SF1 gb 3.1e-146 161-400
Seg seg seg NA 328-340