Jatropha Genome Database

JcCB0005331.20 (JcS_100335.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0005331
Scaffold:
JcS_100335 JcCB0646291(+) =JcCB0206681(-) =JcCA0116061(-) =JcCB0366241(-) =JcCB0600381(+) =JcCB0005331(+) =JcCB0571341(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TMZ2_VITVI 637 61.6 75.1 (tr|D7TMZ2) Whole genome shotgun sequence of line PN40024, scaffold_100.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010654001 PE=4 SV=1
Arabidopsis_pep AT4G38010.1 614 60.9 75.8 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:17859582-17861261 REVERSE
soybean_pep Glyma10g38500.1 612 62.7 77.7  
Medicago_pep IMGA|Medtr4g021980.1 612 61.3 75.0 Site-specific DNA-methyltransferase (cytosine-N4-specific) chr04_pseudomolecule_IMGAG_V3 4323791-4321118 H EGN_Mt090430 20090702
grape_pep GSVIVT01010654001 637 61.6 75.1  
castor_bean_cds --No_Hits--        
castor_bean_pep 30063.m001440 373 38.2 58.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0005331.20 length: 511 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.014 77-105
148-173
176-201
246-272
274-304
347-374
375-404
410-437
449-472
HMMTigr TIGR00756 PPR: 0.085 75-109
176-207
208-242
274-308
344-374
375-409
410-444
447-478
ProfileScan PS51375 PPR 6.960 73-107
174-204
143-173
108-142
272-306
241-271
206-240
307-341
373-407
342-372
408-442
445-475
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 3.3e-183 11-489
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 3.3e-183 11-489
superfamily SSF48452 TPR-like 0.0047 205-480
77-201