Jatropha Genome Database

JcCB0004411.20 (JcS_100186.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0004411
Scaffold:
JcS_100186 JcCB0787851(-) =JcCB0971801(-) =JcCA0255541(-) =JcCB0359051(+) =JcCB0004411(-) =JcCB0100521(+) =JcCB0894111(+) =JcCB0233861(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9HET9_POPTR 540 65.7 82.1 (tr|B9HET9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_563117 PE=4 SV=1
Arabidopsis_pep AT4G36700.1 379 50.0 68.8 | Symbols: | cupin family protein | chr4:17298443-17300337 REVERSE
soybean_pep Glyma11g07020.1 426 55.6 72.2  
Medicago_pep IMGA|Medtr5g019670.1 445 58.0 73.5 Cupin, RmlC-type chr05_pseudomolecule_IMGAG_V3 7358937-7362243 H EGN_Mt090430 20090702
grape_pep GSVIVT01019005001 454 57.0 73.9  
castor_bean_cds --No_Hits--        
castor_bean_pep 30111.m000716 158 28.4 45.1 nutrient reservoir, putative
JAT_13201ests gi|268523131|gb|FM894714.1|FM894714 208 94.1 94.1 FM894714 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000552, mRNA sequence
KJC_r1 KJC_c08914 1281 99.3 99.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0004411.20 length: 595 aa.
IPR006045 Cupin 1
method AccNumber shortName E-value location
Molecular Function GO:0045735 nutrient reservoir activity    
HMMPfam PF00190 Cupin_1 7.7e-25 43-179
239-389
HMMSmart SM00835 no description 5.7e-50 30-184
238-392
IPR011051 Cupin, RmlC-type
superfamily SSF51182 RmlC-like 1.5e-25 232-421
27-212
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 5.7e-44 28-200
235-407
no_ID  
Coil coil coiled-coil NA 407-551
Seg seg seg NA 3-18
410-577