Jatropha Genome Database

JcCB0004391.20 (JcS_101396.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0004391
Scaffold:
JcS_101396 JcCB0812861(-) =JcCA0003701(-) =JcCB0039521(-) =JcCB0004391(-) =JcCB0133481(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl D7U4N2_VITVI 226 99.1 100.0 (tr|D7U4N2) Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023835001 PE=4 SV=1
Arabidopsis_pep AT4G35450.1 198 85.5 95.5 | Symbols: AKR2, AFT, AKR2A | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding | chr4:16839862-16841759 FORWARD
soybean_pep Glyma06g47830.3 218 95.5 99.1  
Medicago_pep IMGA|Medtr5g046490.1 62.8 38.8 55.3 Ankyrin chr05_pseudomolecule_IMGAG_V3 19552098-19546696 E EGN_Mt090430 20090702
grape_pep GSVIVT01023835001 225 99.1 100.0  
castor_bean_cds 30162.m001264 391 90.0 90.0 ankyrin repeat domain protein, putative
castor_bean_pep 30162.m001264 219 95.5 99.1 ankyrin repeat domain protein, putative
JAT_13201ests gi|268523298|gb|FM894064.1|FM894064 579 99.0 99.0 FM894064 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_005037, mRNA sequence
KJC_r1 KJC_c00241 654 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0004391.20 length: 110 aa.
IPR002110 Ankyrin repeat
method AccNumber shortName E-value location
HMMPfam PF00023 Ank 7.1e-09 19-50
52-82
HMMSmart SM00248 no description 9e-05 18-47
51-80
ProfileScan PS50088 ANK_REPEAT 11.674 18-50
51-83
IPR020683 Ankyrin repeat-containing domain
Gene3D G3DSA:1.25.40.20 no description 1.6e-28 2-108
ProfileScan PS50297 ANK_REP_REGION 31.855 1-104
superfamily SSF48403 Ankyrin 7.6e-34 2-106
no_ID  
HMMPanther PTHR18958 ANKYRIN 2.3e-41 2-106
HMMPanther PTHR18958:SF152ANKYRIN REPEAT 2.3e-41 2-106