Jatropha Genome Database

JcCB0003651.20 (JcS_100253.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0003651
Scaffold:
JcS_100253 JcPR01AQ3WW(-) =JcCB0015511(-) =JcCB0424401(-) =JcCB0014891(-) =JcCB0003651(+) =JcCB0460171(+) =JcCB0185581(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SUX2_RICCO 314 55.5 64.5 (tr|B9SUX2) WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0251190 PE=4 SV=1
Arabidopsis_pep AT2G30590.1 171 66.7 84.3 | Symbols: WRKY21 | WRKY21; calmodulin binding / transcription factor | chr2:13033891-13035303 FORWARD
soybean_pep Glyma02g15920.1 176 68.2 84.5  
Medicago_pep IMGA|Medtr5g016540.1 172 40.3 56.7 DNA-binding WRKY chr05_pseudomolecule_IMGAG_V3 5840721-5842661 E EGN_Mt090430 20090702
grape_pep GSVIVT01009441001 179 66.4 87.6  
castor_bean_cds 28455.m000362 236 85.8 85.8 WRKY transcription factor, putative
castor_bean_pep 28455.m000362 314 55.5 64.5 WRKY transcription factor, putative
JAT_13201ests gi|237680854|gb|GO247005.1|GO247005 50.1 87.8 87.8 JcrME_RL0549 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence
KJC_r1 KJC_c00673 83.8 82.8 82.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0003651.20 length: 330 aa.
IPR003657 DNA-binding WRKY
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Molecular Function GO:0043565 sequence-specific DNA binding    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF03106 WRKY 6.9e-29 212-269
HMMSmart SM00774 no description 2.3e-36 210-270
ProfileScan PS50811 WRKY 28.988 205-271
IPR018872 Transcription factor, WRKY, Zn-cluster
HMMPfam PF10533 Plant_zn_clust 1.6e-14 167-208
no_ID  
Gene3D G3DSA:2.20.25.80 no description 2.7e-23 194-272
Seg seg seg NA 127-138
153-163