Jatropha Genome Database

JcCB0001101.10 (JcS_101394.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0001101
Scaffold:
JcS_101394 JcCB0803121(+) =JcCB0001101(+) =JcCD0050496(-) =JcCA0122021(+) =JcCB0035061(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T521_RICCO 511 90.1 96.0 (tr|B9T521) Nucleic acid binding protein, putative (Fragment) OS=Ricinus communis GN=RCOM_1113660 PE=4 SV=1
Arabidopsis_pep AT2G38610.2 404 72.0 83.2 | Symbols: | KH domain-containing protein | chr2:16147552-16149638 REVERSE
soybean_pep Glyma18g44980.1 441 77.3 87.2  
Medicago_pep IMGA|Medtr7g080640.1 429 75.5 86.2 KH, type 1 chr07_pseudomolecule_IMGAG_V3 17204904-17198812 E EGN_Mt090430 20090702
grape_pep GSVIVT01024534001 456 79.8 88.7  
castor_bean_cds 29945.m000086 733 86.3 86.3 nucleic acid binding protein, putative
castor_bean_pep 29945.m000086 511 90.1 96.0 nucleic acid binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02043 204 82.2 82.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0001101.10 length: 281 aa.
IPR004087 K Homology
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 no description 1.1e-07 131-231
IPR004088 K Homology, type 1
Molecular Function GO:0003723 RNA binding    
ProfileScan PS50084 KH_TYPE_1 8.492 148-226
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 1.9e-39 127-261
HMMPanther PTHR11208 RNA-BINDING 2.1e-77 13-259
superfamily SSF54791 Eukaryotic 1.8e-20 131-256