| JcS_200143 | JcCA0020601(+) =JcCB0590151(-) =JcCB0212401(+) =JcCA0317221(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | Q5NRP4_SOLDE | 709 | 55.9 | 71.2 | (tr|Q5NRP4) Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_58t00004 PE=4 SV=1 |
| Arabidopsis_pep | ATMG00860.1 | 72.0 | 37.3 | 61.4 | | Symbols: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD |
| soybean_pep | Glyma02g36320.1 | 688 | 51.3 | 66.2 | |
| Medicago_pep | IMGA|Medtr4g041210.1 | 273 | 31.7 | 49.7 | RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01018780001 | 132 | 47.8 | 64.9 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | 29853.m000370 | 80.1 | 36.6 | 52.1 | conserved hypothetical protein |
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | --No_Hits-- |
| JcCA0317221.30 | length: 736 aa. | |||
| IPR000477 | RNA-directed DNA polymerase (reverse transcriptase) | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003723 | RNA binding | ||
| Molecular Function | GO:0003964 | RNA-directed DNA polymerase activity | ||
| Biological Process | GO:0006278 | RNA-dependent DNA replication | ||
| HMMPfam | PF00078 | RVT_1 | 6.5e-23 | 459-619 |
| ProfileScan | PS50878 | RT_POL | 11.930 | 440-619 |
| IPR001878 | Zinc finger, CCHC-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| HMMPfam | PF00098 | zf-CCHC | 0.00011 | 73-90 |
| HMMSmart | SM00343 | no description | 0.0018 | 74-90 |
| ProfileScan | PS50158 | ZF_CCHC | 9.224 | 74-90 |
| IPR021109 | Peptidase aspartic | |||
| superfamily | SSF50630 | Acid | 1.1e-06 | 150-247 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.70.270 | no description | 4e-18 | 475-619 |
| HMMPanther | PTHR10178 | GAG/POL/ENV | 1e-144 | 256-663 |
| HMMPanther | PTHR10178:SF14 | RETROVIRUS | 1e-144 | 256-663 |
| Seg | seg | seg | NA | 110-129 326-335 |
| superfamily | SSF56672 | DNA/RNA | 4.2e-103 | 402-663 |