Jatropha Genome Database

JcCA0317171.20 (JcS_100088.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0317171
Scaffold:
JcS_100088 JcCB0551591(-) =JcCB0087221(-) =JcCB0294291(-) =JcCA0076121(+) =JcCA0317171(-) =JcCB0615491(-) =JcCB0292291(-) =JcCB0102141(+) =JcPR04ISYPF(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RIG5_RICCO 1157 78.7 82.4 (tr|B9RIG5) Magnesium-chelatase subunit chlD, chloroplast, putative OS=Ricinus communis GN=RCOM_1578810 PE=4 SV=1
Arabidopsis_pep AT1G08520.1 591 74.8 83.5 | Symbols: PDE166, CHLD | CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding | chr1:2696538-2700819 FORWARD
soybean_pep Glyma11g01840.1 1042 72.9 78.8  
Medicago_pep IMGA|Medtr5g009090.1 596 76.1 84.5 Cobaltochelatase subunit chr05_pseudomolecule_IMGAG_V3 1908806-1895513 E EGN_Mt090430 20090702
grape_pep GSVIVT01031555001 947 80.0 82.8  
castor_bean_cds 30169.m006479 2492 90.5 90.5 Magnesium-chelatase subunit chlD, chloroplast precursor, putative
castor_bean_pep 30169.m006479 1157 78.7 82.4 Magnesium-chelatase subunit chlD, chloroplast precursor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0317171.20 length: 756 aa.
IPR000523 Magnesium chelatase, ChlI subunit
method AccNumber shortName E-value location
Biological Process GO:0015979 photosynthesis    
Biological Process GO:0015995 chlorophyll biosynthetic process    
Molecular Function GO:0016851 magnesium chelatase activity    
HMMPfam PF01078 Mg_chelatase 2.9e-10 88-272
IPR002035 von Willebrand factor, type A
HMMPfam PF00092 VWA 2e-07 555-665
HMMSmart SM00327 no description 7.9e-30 552-746
ProfileScan PS50234 VWFA 15.113 554-750
IPR003593 ATPase, AAA+ type, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 1.4e-05 109-289
IPR011776 Magnesium chelatase, ATPase subunit D
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0015995 chlorophyll biosynthetic process    
Molecular Function GO:0016851 magnesium chelatase activity    
HMMTigr TIGR02031 BchD-ChlD: 0 95-743
no_ID  
Coil coil coiled-coil NA 428-449
Gene3D G3DSA:1.10.8.80 no description 4.2e-08 334-399
Gene3D G3DSA:3.40.50.300 no description 1.2e-54 83-289
Seg seg seg NA 404-448
470-484
539-553
668-684
superfamily SSF52540 P-loop 1.1e-51 83-423
superfamily SSF53300 vWA-like 4.5e-25 548-739