Jatropha Genome Database

JcCA0317001.10 (JcS_101057.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0317001
Scaffold:
JcS_101057 JcCB0154831(-) =JcCB0289141(+) =JcCA0317001(+) =JcCB0162471(-) =JcCB0077811(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q8W1A8_PETHY 142 75.9 81.6 (tr|Q8W1A8) Aquaporin-like protein OS=Petunia hybrida GN=PIP2;1 PE=2 SV=1
Arabidopsis_pep AT2G16850.1 139 73.6 80.5 | Symbols: PIP3B, PIP2;8 | PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel | chr2:7301647-7303180 FORWARD
soybean_pep Glyma06g00550.1 141 76.7 83.7  
Medicago_pep IMGA|Medtr3g163530.1 139 74.7 81.6 Major intrinsic protein chr03_pseudomolecule_IMGAG_V3 42984188-42985232 E EGN_Mt090430 20090702
grape_pep GSVIVT01024010001 141 75.6 82.6  
castor_bean_cds 28076.m000411 85.7 85.9 85.9 Aquaporin PIP2.1, putative
castor_bean_pep 29869.m001194 141 75.9 80.5 Aquaporin PIP2.7, putative
JAT_13201ests gi|218687494|gb|GH296148.1|GH296148 402 92.4 92.4 JCL597 Jatropha curcas total leaf library Jatropha curcas cDNA, mRNA sequence
KJC_r1 KJC_c02389 339 99.4 99.4  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0317001.10 length: 89 aa.
IPR000425 Major intrinsic protein
method AccNumber shortName E-value location
Molecular Function GO:0005215 transporter activity    
Biological Process GO:0006810 transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR00783 MINTRINSICP 5.6e-20 11-33
51-71
Gene3D G3DSA:1.20.1080.10 no description 3.7e-17 2-88
HMMPanther PTHR19139 AQUAPORIN 7.3e-37 2-56
HMMPfam PF00230 MIP 8.1e-25 5-68
superfamily SSF81338 Aquaporin-like 2e-18 5-72
no_ID  
HMMPanther PTHR19139:SF27 AQUAPORIN-RELATED 7.3e-37 2-56
Seg seg seg NA 61-66