Jatropha Genome Database

JcCA0316711.10 (JcS_100001.190)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0316711
Scaffold:
JcS_100001 JcCB0130751(-) =JcCA0312871(-) =JcCB0287701(+) =JcCB0171671(-) =JcCA0315721(-) =JcCB0186361(+) =JcCA0066941(+) =JcCA0264441(-) =JcPR10F8MCI(+) =JcCA0277701(-) =JcCB0465311(+) =JcCC0332622(+) =JcCB0455701(-) =JcCB0698151(+) =JcCB0545461(+) =JcCA0316711(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T4A6_RICCO 727 73.2 80.1 (tr|B9T4A6) Glutathione peroxidase OS=Ricinus communis GN=RCOM_0176350 PE=3 SV=1
Arabidopsis_pep AT2G48160.1 302 45.7 61.1 | Symbols: | EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT3G63070.1); Has 1292 Blast hits to 1135 proteins in 175 species: Archae - 2; Bacteria - 174; Metazoa - 679; Fungi - 194; Plants - 113; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink). | chr2:19689784-19696584 REVERSE
soybean_pep Glyma10g02980.1 363 45.2 57.1  
Medicago_pep IMGA|Medtr1g086720.1 395 48.2 57.4 PWWP; Regulation of nuclear pre-mRNA protein chr01_pseudomolecule_IMGAG_V3 17263033-17247045 E EGN_Mt090430 20090702
grape_pep GSVIVT01011100001 387 44.2 57.4  
castor_bean_cds 28153.m000283 509 88.4 88.4 glutathione peroxidase, putative
castor_bean_pep 28153.m000283 727 73.2 80.1 glutathione peroxidase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c10045 1150 99.7 99.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0316711.10 length: 550 aa.
IPR000313 PWWP
method AccNumber shortName E-value location
HMMPfam PF00855 PWWP 1.4e-13 23-88
HMMSmart SM00293 no description 1.6e-08 22-79
ProfileScan PS50812 PWWP 10.974 24-81
no_ID  
Gene3D G3DSA:2.30.30.160 no description 2.3e-22 14-112
HMMPanther PTHR12550 HEPATOMA-DERIVED 1.3e-74 30-440
HMMPanther PTHR12550:SF5 UNCHARACTERIZED 1.3e-74 30-440
Seg seg seg NA 5-20
222-238
425-439
superfamily SSF63748 Tudor/PWWP/MBT 5.9e-23 14-150