Jatropha Genome Database

JcCA0316511.10 (JcS_100628.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0316511
Scaffold:
JcS_100628 JcCB0502581(+) =JcCA0139141(-) =JcCB0062331(+) =JcCB0359061(-) =JcCA0316511(+) =JcCA0151591(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9H1L5_POPTR 1140 69.0 80.4 (tr|B9H1L5) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_759883 PE=4 SV=1
Arabidopsis_pep AT4G35130.1 925 58.2 75.6 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:16721084-16723498 REVERSE
soybean_pep Glyma06g46880.1 528 36.0 58.3  
Medicago_pep IMGA|Medtr4g129330.1 517 37.0 58.0 Protein of unknown function DUF177 chr04_pseudomolecule_IMGAG_V3 30737366-30730605 E EGN_Mt090430 20090702
grape_pep GSVIVT01023971001 1074 62.9 78.8  
castor_bean_cds 29869.m001155 882 82.7 82.7 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29869.m001155 803 78.9 88.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0316511.10 length: 801 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.72 93-122
163-188
193-222
266-293
294-323
367-393
395-421
466-493
496-526
532-558
568-592
635-663
HMMTigr TIGR00756 PPR: 0.092 92-126
162-192
193-227
263-293
294-328
395-429
496-530
531-566
567-598
633-667
ProfileScan PS51375 PPR 8.550 90-124
59-89
160-194
125-159
195-225
292-326
261-291
393-427
362-392
327-361
494-528
463-493
428-462
529-559
565-595
631-665
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 6.7e-282 82-801
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 6.7e-282 82-801
superfamily SSF48452 TPR-like 9.7e-18 363-654
89-389