Jatropha Genome Database

JcCA0316341.20 (JcS_101624.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0316341
Scaffold:
JcS_101624 JcCA0207081(+) =JcCA0316341(+) =JcCB0368641(+) =JcCA0199371(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9S0V7_RICCO 394 84.4 90.2 (tr|B9S0V7) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1538420 PE=4 SV=1
Arabidopsis_pep AT4G26490.1 271 58.2 79.3 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56050.1); Has 263 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13380425-13381231 FORWARD
soybean_pep Glyma18g08160.1 299 67.7 83.1  
Medicago_pep IMGA|Medtr5g104320.1 238 51.7 73.4 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3 41827212-41826484 E EGN_Mt090430 20090702
grape_pep GSVIVT01014834001 134 64.3 81.6  
castor_bean_cds 30154.m001142 446 84.6 84.6 conserved hypothetical protein
castor_bean_pep 30154.m001142 394 84.4 90.2 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0316341.20 length: 248 aa.
IPR004864 Late embryogenesis abundant protein, type 2
method AccNumber shortName E-value location
HMMPfam PF03168 LEA_2 3.5e-07 130-227
no_ID  
Seg seg seg NA 2-18