Jatropha Genome Database

JcCA0316141.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0316141
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T2B8_RICCO 334 55.9 65.0 (tr|B9T2B8) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0410480 PE=4 SV=1
Arabidopsis_pep AT5G64390.2 82.8 49.4 73.4 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding | chr5:25743442-25746742 FORWARD
soybean_pep Glyma08g07190.2 112 58.5 74.5  
Medicago_pep IMGA|Medtr2g009690.1 97.8 55.2 73.6 KH, type 1 chr02_pseudomolecule_IMGAG_V3 2180637-2187804 E EGN_Mt090430 20090702
grape_pep GSVIVT01012514001 120 40.7 55.8  
castor_bean_cds 29235.m000238 400 83.6 83.6 nucleic acid binding protein, putative
castor_bean_pep 29235.m000238 334 55.9 65.0 nucleic acid binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0316141.10 length: 634 aa.
IPR004087 K Homology
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 no description 3.6e-05 286-361
561-631
IPR004088 K Homology, type 1
Molecular Function GO:0003723 RNA binding    
ProfileScan PS50084 KH_TYPE_1 14.886 287-356
562-626
IPR018111 K Homology, type 1, subgroup
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 1.8e-10 289-355
565-624
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 1.2e-10 286-363
561-634
HMMPanther PTHR10288 RNA-BINDING 2.4e-28 286-625
HMMPanther PTHR10288:SF55 RNA-BINDING 2.4e-28 286-625
Seg seg seg NA 37-60
79-90
247-258
390-401
superfamily SSF54791 Eukaryotic 5e-10 550-634
286-362