Jatropha Genome Database

JcCA0316111.10 (JcS_104292.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0316111
Scaffold:
JcS_104292 JcCB0237541(+) =JcCA0316111(-) =JcCA0077561(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9MSY1_POPTR 1712 86.2 91.2 (tr|B9MSY1) PAF1 complex component (Fragment) OS=Populus trichocarpa GN=PAFC901 PE=4 SV=1
Arabidopsis_pep AT2G06210.1 1468 72.4 82.8 | Symbols: ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding | chr2:2429108-2436588 REVERSE
soybean_pep Glyma15g19450.1 1530 76.5 84.8  
Medicago_pep IMGA|Medtr1g093110.1 53.5 22.2 42.8 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative chr01_pseudomolecule_IMGAG_V3 18843342-18831905 F EGN_Mt090430 20090702
grape_pep GSVIVT01015096001 1582 79.5 87.9  
castor_bean_cds 29739.m003777 2385 89.0 89.0 tpr repeat nuclear phosphoprotein, putative
castor_bean_pep 29739.m003777 1661 84.3 89.2 tpr repeat nuclear phosphoprotein, putative
JAT_13201ests gi|262090581|gb|GT228939.1|GT228939 167 100.0 100.0 JC504 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL11SE.G11.scf 5', mRNA sequence
KJC_r1 KJC_c04187 1586 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0316111.10 length: 1025 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
HMMPfam PF00515 TPR_1 1.4e-05 158-186
301-331
334-365
670-698
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.40.10 no description 2.3e-32 62-284
296-431
474-753
IPR013026 Tetratricopeptide repeat-containing
ProfileScan PS50293 TPR_REGION 54.601 46-739
IPR019734 Tetratricopeptide repeat
HMMSmart SM00028 no description 1.2 84-117
118-151
153-186
261-294
298-331
332-365
404-439
481-514
515-548
549-582
670-703
706-739
ProfileScan PS50005 TPR 7.198 84-117
118-151
153-186
261-294
298-331
332-365
404-437
481-514
515-548
549-582
670-703
706-739
no_ID  
Coil coil coiled-coil NA 758-779
808-880
948-969
HMMPanther PTHR14027 TPR 0 1-987
HMMPanther PTHR14027:SF2 TPR 0 1-987
Seg seg seg NA 819-838
905-924
superfamily SSF48452 TPR-like 9.9e-24 153-431
479-752
14-201