Jatropha Genome Database

JcCA0313841.20  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0313841
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RB17_RICCO 676 76.7 84.9 (tr|B9RB17) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1510500 PE=4 SV=1
Arabidopsis_pep AT1G03510.1 559 63.9 76.0 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:876258-877547 REVERSE
soybean_pep Glyma15g40620.1 297 38.5 56.9  
Medicago_pep IMGA|Medtr7g083950.1 302 38.3 58.4 Tetratricopeptide-like helical, identical chr07_pseudomolecule_IMGAG_V3 18070671-18072734 H EGN_Mt090430 20090702
grape_pep GSVIVT01021015001 618 71.3 80.9  
castor_bean_cds 30147.m013942 527 81.5 81.5 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30147.m013942 676 76.7 84.9 pentatricopeptide repeat-containing protein, putative
JAT_13201ests gi|268524443|gb|FM895123.1|FM895123 307 100.0 100.0 FM895123 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001695, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0313841.20 length: 436 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0045 125-151
233-258
259-286
294-321
331-355
400-426
HMMTigr TIGR00756 PPR: 0.016 125-156
157-192
259-293
294-329
330-361
396-430
ProfileScan PS51375 PPR 9.821 21-51
123-153
92-122
57-91
155-190
191-225
257-291
226-256
292-327
328-358
394-428
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.2e-149 22-435
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 1.2e-149 22-435
Seg seg seg NA 415-424
superfamily SSF48452 TPR-like 6.7e-27 25-423