Jatropha Genome Database

JcCA0312871.10 (JcS_100001.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0312871
Scaffold:
JcS_100001 JcCB0130751(-) =JcCA0312871(-) =JcCB0287701(+) =JcCB0171671(-) =JcCA0315721(-) =JcCB0186361(+) =JcCA0066941(+) =JcCA0264441(-) =JcPR10F8MCI(+) =JcCA0277701(-) =JcCB0465311(+) =JcCC0332622(+) =JcCB0455701(-) =JcCB0698151(+) =JcCB0545461(+) =JcCA0316711(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S450_RICCO 329 55.8 65.5 (tr|B9S450) DNA binding protein, putative OS=Ricinus communis GN=RCOM_0558970 PE=4 SV=1
Arabidopsis_pep AT5G64980.1 97.8 50.0 65.7 | Symbols: | unknown protein | chr5:25960947-25963000 REVERSE
soybean_pep Glyma17g08300.1 81.3 31.0 51.1  
Medicago_pep IMGA|Medtr1g086660.1 116 31.5 46.0 Helix-loop-helix DNA-binding chr01_pseudomolecule_IMGAG_V3 17207822-17210409 E EGN_Mt090430 20090702
grape_pep GSVIVT01011109001 231 40.4 55.3  
castor_bean_cds 29647.m002113 244 83.9 83.9 DNA binding protein, putative
castor_bean_pep 29647.m002113 329 55.8 65.5 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0312871.10 length: 343 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMSmart SM00353 no description 4.8e-05 219-268
ProfileScan PS50888 HLH 10.491 217-263
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
superfamily SSF47459 HLH, 3.2e-09 211-295
no_ID  
Seg seg seg NA 218-232