Jatropha Genome Database

JcCA0312381.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0312381
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RNU6_RICCO 519 71.3 83.7 (tr|B9RNU6) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0920790 PE=4 SV=1
Arabidopsis_pep AT3G29230.1 234 37.4 55.5 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:11188803-11190605 FORWARD
soybean_pep Glyma08g46430.1 216 35.4 57.1  
Medicago_pep IMGA|Medtr8g077580.1 226 36.2 56.2 Asp/Glu racemase chr08_pseudomolecule_IMGAG_V3 15476837-15474293 E EGN_Mt090430 20090702
grape_pep GSVIVT01030645001 235 39.1 56.9  
castor_bean_cds 29848.m004527 418 80.6 80.6 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29848.m004527 519 71.3 83.7 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0312381.10 length: 338 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00074 117-144
149-174
179-207
210-237
283-306
312-338
HMMTigr TIGR00756 PPR: 0.053 117-147
148-178
179-209
210-244
280-314
ProfileScan PS51375 PPR 6.281 14-48
115-149
84-114
208-242
177-207
150-176
309-338
278-308
243-277
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 6.3e-112 10-338
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 6.3e-112 10-338
superfamily SSF48452 TPR-like 0.00088 143-333
18-142